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The ONR 33 NEPTUNE Program is a two-year pilot program providing funding to five universities, the U.S. Naval Academy and the Naval Postgraduate School. Its goals are to help the Navy and Marine Corps discover ways to improve energy conservation, generate renewable energy and implement energy-efficient technologies—while giving active-duty military, military students and veterans the chance to immerse themselves in university-level research.

The Office of Naval Research's Fuel Flexibility for Contingency Operations program comprises basic and applied research to support naval needs for operational energy resilience and sustained operations when conventional fuels are not abundantly available. This program seeks technological breakthroughs to enable the generation of synthetic fuels from abundant and logistically compatible resources.

The Office of Naval Research's Advanced Power and Energy for Undersea Applications program aims to develop component, subsystem and system technologies for advanced high-energy density and power density propulsion systems, and to enable increased endurance and reliability in an air-independent environment.