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The Naval STEM Coordination Office, located at the Office of Naval Research, under the leadership of the Chief of Naval Research as the Naval STEM Executive, serves as the central coordination and information resource for Naval STEM efforts.

The Office of Naval Research's Applied and Computational Analysis program develops and exploits methods in modern and classical mathematical analysis with emphasis on mathematical and computational models of physical phenomena.

The Office of Naval Research Computational Methods for Decision Making Applied Research Program is composed of three thrusts—Large-scale Distributed Decision-making, Automated Image Understanding and Resource Optimization.

The Office of Naval Research's EO/IR Sensors and Sensor Processing program has the objective of developing high-performance, low-cost, next generation electro-optic sensors, devices and autonomous processing to provide real-time detection, tracking, classification, and identification of air, sea-surface, and ground targets in all weather conditions.

The Office of Naval Research's Electrochemical Materials program is focused on developing a fundamental understanding of charge (electron and ion) storage, transport and transfer mechanisms, and applying that knowledge to inform the development of materials, materials architectures and devices that address Navy and Marine Corps application power and energy needs.

Dielectric Films for Capacitors is an Office of Naval Research program.

The ONR 33 NEPTUNE Program is a two-year pilot program providing funding to five universities, the U.S. Naval Academy and the Naval Postgraduate School. Its goals are to help the Navy and Marine Corps discover ways to improve energy conservation, generate renewable energy and implement energy-efficient technologies—while giving active-duty military, military students and veterans the chance to immerse themselves in university-level research.

The Office of Naval Research's Navy Undersea Research Program (NURP), in collaboration with the National Science Foundation, sponsors science and engineering graduate students pursuing thesis topics in core undersea weaponry technology areas.

The Human Performance, Training and Education (HPT&E) program is focused on developing scalable and effective science and technology solutions for Marine Corps Infantry / close combat forces during training and education pipelines, and operations focused upon Small Unit Dominance within the Fleet / Force.

The aim of the Office of Naval Research's Basic Physiological Sciences program is to invest in fundamental and applied human physiology and human factors focused research efforts that are relevant to contemporary and projected U.S. Navy and U.S. Marine Corps operational capability gaps.